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How To Process Payroll With These 8 Simple Payroll Process Steps?

  • steps to process payroll
  • 12 min read
  • June 14, 2024

Payroll Process Steps

We often use the term ‘it’s not as easy as you think,’ right? Well, all the HR also have this same thought in their mind while ensuring all the payroll process steps in the company! And as per them, such terms are just made to convey the difficult payroll process in india!

Because if you would have a look at the step by step payroll process, then you can understand how tough this payroll can be! Because just like the old times, it’s not as easy as handing over paychecks to employees for their work!

With time, many taxations have been imposed on the process of payroll! And all of those charges are being deducted from the salary, even before the employee can get their hands on it! So you can at least have an idea regarding the possible complexities that come across while doing a payroll.

Here in this blog, we will help you explain all the steps of payroll services in India so you can improve your understanding regarding that. Once you have understood the importance of payroll processing, then we will start listing 8 crucial steps in payroll process.

So, let’s begin with the basics: What is payroll processing?’

For Processing payroll accurately and efficiently is undoubtedly crucial for any business because it comes in a cycle that needs to be done every week/month. And to process payroll in India you need to streamline your payroll tasks, and that is where the role of the online payroll software comes into the picture. So, let’s learn more about it and its crucial steps to process payroll!

How Payroll Process Steps Can Help You?

Knowing the cruciality of your payroll process steps to help ensuring on time payroll is as important as knowing “How to process payroll in India!” Managing payroll can easily be termed as one of the most critical responsibilities of any business. Because a well-structured payroll process in India is there to ensure that employees are receiving accurate & timely salaries while complying with tax regulations.

However, when you decide to handle process payroll manually, you tend to face so much trouble that can be time-consuming & prone to errors. So, if you can follow this payroll process step by step, you can simply:

  • Ensure Compliance: Proper HR and payroll management solutions help avoid legal fines and tax penalties.
  • Improve Accuracy: A structured approach minimizes payroll errors and miscalculations.
  • Enhance Employee Satisfaction: Timely and correct salary payments build trust and morale.
  • Save Time & Resources: Automating payroll reduces administrative burden, allowing HR teams to focus on strategic tasks.
  • Simplify Record-Keeping: Maintaining clear payroll records ensures transparency and simplifies audits.

Understanding all the crucial steps in the payroll process can significantly streamline your operations, and that makes payroll processing much smoother & hassle-free. Now that you have understood the importance of these payroll process steps, it’s time to explore 8 essential payroll process steps every company should know!

8 Payroll Process Steps To Process A Payroll

8 Payroll Process Steps

“What are the steps in the payroll process?” It’s one of the most frequent questions for HR. A well-structured payroll process in India is highly crucial for ensuring timely & accurate salary payments while complying with all the tax regulations.

Without a proper step-by-step payroll process, it would be highly difficult for businesses to face payroll errors, compliance issues as per the payroll policy & dissatisfied employees. To simplify the process and steps for preparation of payroll, here are all the 8 crucial Indian payroll process steps that every business should know and follow seamlessly:

1. Collect Employee Information

The first and foremost step in payroll processing India is to collect all the essential employee details. This information is gonna be the foundation of an accurate payroll system by helping to prevent all the payroll miscalculations, delays, and even the legal issues.

  • Personal Details: Full name, address, date of birth, and contact information.
  • Bank Details: Account number and IFSC code for direct salary deposits.
  • Tax-Related Documents: PAN, Aadhaar, and investment declarations for accurate TDS calculations.
  • Employment Details: Job role, department, date of joining, salary structure, and applicable benefits.
  • Statutory Registration Numbers: Employees’ Provident Fund (EPF) and Employee State Insurance (ESI) numbers for compliance.

Accurate data collection is there to ensure seamless payroll accuracy so all the possible tax penalties and salary disputes can be avoided.

2. Define a Payroll Schedule

Every company must establish a payroll cycle that aligns with its operational needs and legal requirements. The most common payroll schedules in India include:

  • Monthly Payroll – Used by most organizations; salaries are disbursed on a fixed date each month.
  • Bi-Weekly Payroll – Employees are paid every two weeks, commonly used in industries with hourly wages.
  • Weekly Payroll – Suitable for contract-based or gig workers.

A well-defined payroll schedule with the best HR payroll process steps is there to ensure that all employees are receiving their salaries on time & businesses are managing their cash flow much more efficiently.

3. Track Employee Attendance & Working Hours

An essential part of the payroll process in India is recording employee attendance and working hours, as salary calculations depend on them. Businesses can track attendance using:

  • Manual Registers – Traditional but prone to errors.
  • Biometric Systems – Fingerprint or facial recognition for accurate records.
  • HRMS & Payroll Software – Automates attendance tracking and syncs directly with payroll calculations.

Once businesses have integrated the seamless time tracking with HR payroll software, they can seamlessly reduce all the possible payroll discrepancies. Furthermore, they can easily ensure that their employees are getting paid for actual work done.

4. Calculate Gross Salary

Once attendance and working hours are recorded, businesses must calculate gross salary—the total earnings before deductions. Because this calculation of the gross salary belongs one of the 5 basic steps in processing payroll.

Components of Gross Salary

  • Basic Salary – Fixed monthly pay.
  • Allowances – House Rent Allowance (HRA), Dearness Allowance (DA), Travel Allowance (TA), etc.
  • Overtime Pay – Additional payment for extra hours worked.
  • Bonuses & Incentives – Performance-based earnings.

Calculating gross salary accurately ensures that all earnings are considered before moving to deductions.

5. Deduct Taxes & Other Contributions

A crucial step in payroll process is determining the right deductions before processing payroll. Deductions include:

Tax Deducted at Source (TDS)

Calculated based on employee’s annual salary and applicable tax slab.

Businesses must direct deposit TDS with the Income Tax Department and issue Form 16.

Provident Fund (PF)

Employee and employer each contribute 12% of basic salary to EPF.

Helps employees save for retirement.

Professional Tax (PT)

Applicable in specific states like Maharashtra, Karnataka, and West Bengal.

Employee State Insurance (ESI)

Employers contribute 3.25% and employees 0.75% for medical benefits.

Other Deductions

Loans, salary advances, and voluntary deductions like health insurance.

Employers must ensure all deductions are accurate to avoid compliance issues.

6. Disbursement of Employee Salaries

After calculating the net salary (gross salary minus deductions), businesses must ensure timely salary payments. Payment methods include:

  • Direct Bank Transfer – The most preferred and secure method.
  • Cheque Payments – These are used in some traditional setups.
  • Cash Payments – These are rarely used due to compliance risks.
  • Payroll Cards – Preloaded salary cards for employees without bank accounts.

Using payroll processing software India streamlines salary disbursement, ensuring payments are made on time without manual errors.

7. Generate Payslips & Maintain Payroll Records

Once salaries are processed, businesses must issue payslips to employees. Payslips should contain:

  • Basic Details: Employee name, ID, department, and designation.
  • Salary Breakdown: Gross pay, deductions, and net salary.
  • Tax Details: TDS, PF, and other statutory deductions.

Maintaining detailed payroll records is legally required and helps businesses in audits, compliance reporting, and resolving payroll disputes.

8. File Taxes & Compliance Reports

The final step in the payroll process in India is filing statutory tax reports with the government. Businesses must have workforce management software to create a payroll report and:

  • Submit TDS Returns: File quarterly returns and issue Form 16 to employees.
  • Deposit EPF & ESI Contributions: Ensure timely payments to regulatory bodies.
  • File Professional Tax (PT): If applicable, remit PT to the respective state government.

Using HRMS software helps automate tax filings, reducing the risk of penalties due to delays or miscalculations.

Why Following Payroll Process Steps is Essential?

By implementing these 8 payroll process steps, businesses can understand “what is a payroll” and:

  • Avoid payroll errors and compliance issues.
  • Improve salary accuracy and employee trust.
  • Use payroll software, a seamless automation to save time.
  • Maintain detailed financial records for audits and reporting.

A well-structured step-by-step payroll process is there to ensure that businesses are meeting legal obligations while keeping payroll operations smooth & error-free. Companies can use free online payroll services to ensure all the payroll process steps for better employee compensation.

Experience a 2X Faster Payroll Process with Our Super Payroll!

Use Super Payroll for an improved & error-free payroll!

Parting Thoughts,

A well-structured payroll process in India is highly essential for every business, no matter what they do or how they operate! And for that reason, ensuring employees are paid accurately and on time while maintaining full compliance with legal requirements.

So, if, as a business, you have learned to follow a step by step payroll process, companies can eliminate payroll errors, simply reduce their administrative burdens & enhance overall efficiency. For that reason, investing in HRMS & payroll software is highly crucial as it can further simplify employee payroll operations by automating calculations & compliance filings.

So, whether you are a small business or a large enterprise, a streamlined payroll processing guide can literally help you in multiple aspects, including;

  • Saving valuable time,
  • Preventing legal issues, and
  • Improving employee satisfaction.

By implementing the 8 payroll process steps mentioned in this guide, you can establish a smooth, efficient & error-free payroll system. A system that benefits both your employees and your business. A system like Superworks can literally end all of your payroll troubles with highly efficient automation.

FAQs

What is the workflow process of payroll?

The payroll workflow is a complex process that includes various steps involved in payroll processing, from collecting employee information to calculating salaries, deducting taxes, processing payments & also the crucial step of filing tax returns. The key steps in the payroll process in India include:

  • Gathering employee details (bank info, PAN, Aadhaar, salary structure).
  • Tracking attendance and work hours.
  • Calculating gross salary.
  • Deducting TDS, PF, ESI, and other contributions.
  • Processing salary payments.
  • Generate payslips by salary slip generator and maintain records.
  • Filing tax and compliance reports.

How to calculate payroll?

Payroll calculation is a process that may seem simple but stays as one of the most complex HR tasks. The process involves determining an employee's gross salary first, applying statutory deductions & arriving at the net salary to be paid.

Here’s the formula to Calculate Payroll:

  • Net Salary = Gross Salary – (TDS + PF + ESI + Professional Tax + Other Deductions)
  • Gross Salary = Basic Salary + Allowances + Bonuses + Overtime Pay
  • Deductions = TDS (as per tax slabs) + Provident Fund (12%) + Professional Tax + Loan Repayments [by efficient loan management software]
  • Net Salary = Final amount payable to the employee

Using payroll management software in India automates calculations, reducing errors and ensuring compliance.

What is the Indian payroll process?

The payroll process in India includes calculating employee salaries while ensuring statutory compliance with tax laws like:

  • TDS (Tax Deducted at Source) – Income tax deducted from employee salaries.
  • EPF (Employees’ Provident Fund) – 12% deduction for retirement savings.
  • ESI (Employee State Insurance) – Health and insurance benefits for eligible employees.
  • Professional Tax (PT) – Levied by some state governments.

What is the TDS cut in salary?

TDS (that stands for Tax Deducted at Source) is primarily deducted based on the employee’s income slab & their respective investment declarations. The employer deducts TDS on a monthly basis, and then deposits it with the Income Tax Department.

TDS Calculation Example

If an employee earns ₹6,00,000 annually, they fall under the 5% tax slab (as per the latest tax regime). The employer will deduct TDS accordingly before disbursing the net salary. To reduce TDS deductions, employees can submit investment proofs under Section 80C (e.g., PF, LIC, ELSS, etc.).

What is payroll structure?

A payroll structure defines the breakdown of an employee’s salary into different components. A standard payroll structure in India includes:

Fixed Components:

  • Basic Salary (40%-50% of CTC)
  • House Rent Allowance (HRA)
  • Dearness Allowance (DA)
  • Special Allowances

Deductions:

  • Employee Provident Fund (EPF)
  • Professional Tax (PT)
  • Income Tax (TDS)

Benefits & Reimbursements:

  • Medical Allowance
  • Travel Allowance (LTA)
  • Food Coupons

Understanding the payroll structure is highly crucial for any business because only through that can we ensure correct salary disbursements & tax compliance.

Alpesh Vaghasiya

The founder & CEO of Superworks, I'm on a mission to help small and medium-sized companies to grow to the next level of accomplishments.With a distinctive knowledge of authentic strategies and team-leading skills, my mission has always been to grow businesses digitally The core mission of Superworks is Connecting people, Optimizing the process, Enhancing performance.

Superworks is providing the best insights, resources, and knowledge regarding HRMS, Payroll, and other relevant topics. You can get the optimum knowledge to solve your business-related issues by checking our blogs.